NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0049116_10084358

Scaffold Ga0049116_10084358


Overview

Basic Information
Taxon OID3300003786 Open in IMG/M
Scaffold IDGa0049116_10084358 Open in IMG/M
Source Dataset NameMarine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius vacuus BELIZE.2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)725
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group → Sinorhizobium → Sinorhizobium meliloti(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Annelida → Digestive System → Unclassified → Unclassified → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location
Location NameGermany: Marburg
CoordinatesLat. (o)50.8Long. (o)8.81Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049416Metagenome146Y

Sequences

Protein IDFamilyRBSSequence
Ga0049116_100843581F049416N/AFVLLDRQEDKQVGVYSIDDYQLLRHLIVPGFNPPIHHDITSCERRKCLYLSDHDNSCIHRYELASSATSKWSVAGKPFCLSVTPSGNLLITCREPNKLVELSADGGESVREIALQADIVDPEHSVQLTTGQMIVCHGYSSSSGGNLHRVCVVGDDGKVTRSYGGERGSDVGQLSYPCHLAVDKDSQFIFVADWGNGRVVLLSPTLEFVRYVIEGMLYPLRIYFHQATRRLFVSQRNHRDV

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